Install

SemiBin can run on Python 3.6-3.9.

Install from bioconda

Note : If you want to use SemiBin with GPU, you need to install Pytorch with GPU support. Or conda install -c bioconda semibin just install Pytorch with CPU support.

conda create conda create -n SemiBin python==3.7
conda activate SemiBin
conda install -c bioconda semibin
conda install pytorch torchvision torchaudio cudatoolkit=10.2 -c pytorch-lts

Install from source

Install dependence packages using conda: MMseqs2,Bedtools, Hmmer, Fraggenescan.

conda install -c conda-forge -c bioconda mmseqs2=13.45111
conda install -c bioconda bedtools hmmer fraggenescan==1.30
python setup.py install