Outputs of SemiBin
Single sample/co-assembly binning
output_recluster_bins
: directory of all reconstructed bins after reclustering.
output_bins
: directory of all reconstructed bins before reclustering.
model.h5
: saved semi-supervised deep learning model.
data.csv/data_split.csv
: data used in the training of deep learning model.
*_data_cov.csv/*_data_split_cov.csv
: coverage data generated from depth file.
cannot/cannot.txt
: cannot-link file used in the training.
Multi-samples binning
bins
: Reconstructed bins from all samples.
samples/*.fasta
: Contig fasta file for every sample from the input whole_contig.fna.
samples/*_data_cov.csv
: same in single sample/coassembly binning.
samples/{sample-name}/
: directory of the output of SemiBin for every sample(same as that in Single sample/coassembly binning).