Outputs of SemiBin

Single sample/co-assembly binning

• output_recluster_bins: directory of all reconstructed bins after reclustering.
• output_bins: directory of all reconstructed bins before reclustering.
• model.h5: saved semi-supervised deep learning model.
• data.csv/data_split.csv: data used in the training of deep learning model.
• *_data_cov.csv/*_data_split_cov.csv: coverage data generated from depth file.
• cannot/cannot.txt: cannot-link file used in the training.

Multi-samples binning

• bins: Reconstructed bins from all samples.
• samples/*.fasta: Contig fasta file for every sample from the input whole_contig.fna.
• samples/*_data_cov.csv: same in single sample/coassembly binning.
• samples/{sample-name}/: directory of the output of SemiBin for every sample(same as that in Single sample/coassembly binning).